Accueil > Microbiologie & Sciences Humaines > Données pour articles > Genome-wide analysis of horizontally acquired genes in the genus Mycobacteria

Microbiologie & Sciences Humaines

Genome-wide analysis of horizontally acquired genes in the genus Mycobacteria

Phylogenetic trees associated with the manuscript

Arup Panda1,2,3, Michel Drancourt1, Tamir Tuller3, Pierre Pontarotti2


Affiliation :

1. Institut Hospitalo-Universitaire (IHU) Méditerranée Infection, Pôle des Maladies Infectieuses et Tropicales Clinique et Biologique, Fédération de Bactériologie-Hygiène-Virologie, Centre Hospitalo-Universitaire Timone, Assistance Publique-Hôpitaux de Marseille, Marseille, France.

2. Aix-Marseille Université, I2M, UMR-CNRS 7373, Evolution Biologique et Modélisation, Marseille, France

3. Department of Biomedical Engineering, Tel-Aviv University, Ramat Aviv 69978, Israel

Authors’ email:

Arup Panda - stararup@gmail.com

Michel Drancourt- michel.drancourt@univ-amu.fr

Tamir Tuller- tamirtul@post.tau.ac.il

Pierre Pontarotti - pierre.pontarotti@univ-amu.fr


Description of files:

File1.tar: The file contains 2033 phylogenetic trees where we found gene transfer in FastTree phylogeny. All these trees were constructed with FastTree (details in main text).  For detailed description of donor and recipient species please consult Supplementary file 2 of this manuscript.

 

File2.tar: The file contains 505 phylogenetic trees where we found evidence of gene transfer in multiple branches of the tree. All these trees were constructed with FastTree (details in main text).  For detailed description of donor and recipient species please consult Supplementary file 2 of this manuscript.

 

File3.rar: The file contains 1683 phylogenetic trees where we found evidence of gene transfer in RaxML phylogeny. All these trees were constructed with RaxML (details in main text).   For detailed description of donor and recipient species please consult Supplementary file 2 of this manuscript.



© IHU Méditerranée Infection - Contact / Plan du site / Crédits