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Microbiologie & Sciences Humaines

A-C

Achromobacter

Range of percentages of similarity : 97,7 – 99,8 %

7 species studied

minimum : A. ruhlandii AF205370 – A. piedchaudii AB681803

maximum : A. spanius AY170848 – A. marplatensis EU150134

Acidovorax

Range of percentages of similarity : 95,5 – 99,9 %

13 species studied

minimum : A. konjaci AJ420325 – A. temperans AF078766

maximum : A. avenae NR_041757 – A. oryzae DQ360414

Acinetobacter

Range of percentages of similarity : 92,7 – 99,9 %

27 species studied

minimum : A. rudis EF204258 – A. tjernbergiae AF509825

maximum : A. calcoaceticus AJ888983 – A. pittii HQ180184

Actinobacillus

Range of percentages of similarity : 91,2 – 99,6 %

18 species studied

minimum : A. scotiae Y09653 – A. anseriformium AY172727 ; A. scotiae Y09653 – A. hominis AY362890

maximum: A. equuli EF166060 – A. suis AY362899

Actinobaculum

Range of percentages of similarity : 92,4 - 95,7 %

4 species studied

minimum : A. suis S83623 - A. urinale AJ439453

maximum : A. massiliense AF487679 - A. suis S83623

Actinomyces

Range of percentages of similarity : 85,0 - 98,0 %

39 species studied

minimum : A. neuii AM084228 - A. dentalis AJ697609

maximum : A. oris GQ421308 - A. naeslundii X81062

Aerococcus

Range of percentages of similarity : 93,2 – 99,7 %

7 species studied

minimum : A. christensenii Y17318 – A. suis AM230658

maximum : A. urinaequi D87677 – A. viridans AB680262

Aeromicrobium

Range of percentages of similarity : 95,7 – 99,0 %

10 species studied

minimum : A. ponti AM778683 – A. flavum EF133690

maximum : A. panaciterrae AB245387 – A. ginsengisoli AB245394

Aeromonas

Range of percentages of similarity : 90,2 - 100 %

31 species studied

minimum : A. simiae AJ536821 – A. sharmana DQ013306

maximum : A. bestiarum X60406 – A. salmonicida AB027542 – A. piscicola FM999971

Afipia

Range of percentages of similarity : 97,3 – 99,4 %

5 species studied

minimum : A. broomeae U87759 – A. birgiae AF288304

maximum : A. felis AGWZ01000001 – A. masiliensis AY029562

Aggregatibacter

Range of percentages of similarity : 94,0 – 97,0 %

3 species studied

minimum : A. actinomycetemcomitans CP001733 – A. segnis AF300472

maximum : A. segnis AF300472 – A. aphrophilus AY362906

Alcaligenes

Range of percentages of similarity : 98,5 %

2 species studied

minimum : A. faecalis D88008 – A. aquatilis JX986974

Aliivibrio

Range of percentages of similarity : 96,0 – 99,7 %

6 species studied

minimum : A. fischeri AY341436 – A. wodanis AJ132227

maximum : A. logei AJ437616 – A. salmonicida EU257756

Alistipes

Range of percentages of similarity : 90,1 – 97,1 %

5 species studied

minimum : A. shahii AY974072 – A. indistinctus AB490804

maximum : A. finegoldii AY643083 - A. shahii AY974072

Anaerococcus

Range of percentages of similarity : 92,3 – 97,2 %

6 species studied

minimum : A. tetradius AF542234 – A. vaginalis AF542229

maximum : A. tetradius AF542234 – A. prevotii NR_041939

Anaplasma

Range of percentages of similarity : 95,6 - 99,7 %

6 species studied

minimum : A. bovis U03775 - A. marginale AF309866
A. bovis U03775 - A. ovis AF309865

maximum : A. bovis U03775 - A. ovis AF309865

Arthrobacter

Range of percentages of similarity : 79,6 - 100 %

70 species studied

minimum : A viscosus AJ639832 – A. psychrolactophilus AF134179

maximum : A. oxydans X83408 – A. polychromogenes X80741

Atopobium

Range of percentages of similarity : 92,3 – 96,5 %

4 species studied

minimum : A. rimae AF292371 – A. minutum X67148

maximum :  A. rimae AF292371 -  A. parvulum AF292372

Bacillus

Range of percentages of similarity : 82,7 - 100 %

178 species studied

minimum : B. decisifrondis DQ465405 – B. schlegelii AB042060

maximum : B. mycoides AB021192 – B. weihenstephanensis AB021199 ;

B. aerophilus AJ831844 – B. stratosphericus AJ831841

Bacteroides

Range of percentages of similarity : 74,8 – 98,7 %

41 species studied

minimum : B. coprocola AB200224 – B. galacturonicus DQ497994

maximum : B. faecis AB547640 – B. thetaiotaomicron AB510710

Bartonella

Range of percentages of similarity : 97,3 – 99,8 %

25 species studied

minimum : B. chomelii AY254309 – B. vinsonii subsp. berkhoffii DQ228135

maximum : B. bovis AF293391 – B. schoenbuchii AJ278187

Bifidobacterium

Range of percentages of similarity : 90,7 - 100 %

45 species studied

minimum : B. animalis D86185 – B. psychroaerophilum AY174108

maximum : B. merycicum D86193 – B. magnum GU361824

Bordetella

Range of percentages of similarity : 98,0 - 100 %

8 species studied

minimum : B. avium AF177666 – B. petrii AJ249861

maximum : B. bronchiseptica AB680479 – B. parapertussis AF366577

Borrelia

Range of percentages of similarity : 94,5 – 99,9 %

21 species studied

minimum : B. japonica L40597 – B. miyamotoi D45192

maximum : B. crocidurae GQ358191 – B. duttonii AF107363

Bosea

Range of percentages of similarity : 97,4 – 99,9 %

8 species studied

minimum : B. lathyri FR774993 – B. minatitlanensis AF273081

maximum : B. eneae AF288300 – B. vestrisii AF288306

Brachyspira

Range of percentages of similarity : 95,6 – 99,7 %

7 species studied

minimum : B. pilosicoli AY155458- B. aalborgi Z22781

maximum : B. intermedia CP002874 – B. hyodysenteriae U14930           

Bradyrhizobium

Range of percentages of similarity : 96,4 – 99,5 %

13 species studied

minimum : B. elkanii U35000 – B. iriomotense AB300992

maximum : B. canariense AJ558025 – B. japonicum U69638

Brevibacillus

Range of percentages of similarity : 92,4 -99,8 %

17 species studied

minimum : B. laterosporus D16271 – B. aydinogluensis HQ419073

maximum : B. formosus AB112712 – B. brevis GU125635

Brevibacterium

Range of percentages of similarity : 79,0 – 99,5 %

30 species studied

minimum : B. mcbrellneri X93594- B. frigoritolerans  AM747813

maximum : B. massiliense EU868814 – B. ravenspurgense EU086793

Brevundimonas

Range of percentages of similarity : 95,1 – 99,9 %

23 species studied

minimum : B. bacteroides AJ227782 – B. diminuta AB021415

maximum : B. vesicularis AJ227780 – B. nasdae AB071954

Brucella

Range of percentages of similarity : 99,4 - 100 %

10 species studied

minimum : B. inopinata EU053207 – B. ovis L26168

maximum : B. abortus AM158979 – B. ceti AM158982 ;

B. melotensis AY594215 – B. neotomae AY594216 - B. microti AM392286 – B. pinnipedialis AM158981 – B. suis AM158980

Burkholderia

Range of percentages of similarity : 92,2 – 99,8 %

63 species studied

minimum : B. silvatlantica AY965240 – B. andropogonis DQ786951

maximum : B. arboris AM747630 – B. lata AM905038

Campylobacter

Range of percentages of similarity : 89,1 – 99,3 %

23 species studied

minimum : C. helveticus U03022 – C. hominis AJ251584

maximum : C. lari subsp. lari AY621114 – C. volucris FM883694

Capnocytophaga

Range of percentages of similarity : 89,3 – 98,6 %

8 species studied

minimum : C. granulosa U41347 – C. haemolytica AB671760

maximum : C. canimorsus AY643075 – C. cynodegmi AY643076

Caulobacter

Range of percentages of similarity : 96,3 – 99,7 %

7 species studied

minimum : C. fusiformis AJ227759 – C. henricii AJ227758

maximum : C. segnis AB023427 – C. vibrioides AJ009957

Cedecea

Range of percentages of similarity : 96,8 – 99,2 %

3 species studied

minimum : C. neteri AB086230 – C. lapagei AB273742

maximum : C. neteri AB086230 – C. davisae AF493976

Cellulomonas

Range of percentages of similarity : 93,3 – 99,6 %

18 species studied

minimum : C. bogoriensis X92152 – C. phragmiteti AM902253

maximum : C. biazotea X83802 – C. fimi X83803

Chlamydia

Range of percentages of similarity : 97,2 – 98,4 %

3 species studied

minimum : C. trachomatis D89067 - C. suis NR_029196

maximum : C. muridarum D85718 - C. trachomatis D89067

Chlamydiophila

Range of percentages of similarity : 94,8 – 99,8 %

6 species studied

minimum : C. felis D85701 – C. pneumoniae NR_026527

maximum : C. abortus D85709 – C. psittaci NR_036864

Chlorobium

Range of percentages of similarity : 95,7 – 96,9 %

4 species studied

minimum : C. phaeovibrioides AJ290834 – C. clathratiforme AM086645

maximum : C. phaeovibroides AJ290834 – C. limicola CP001097

Chryseobacterium

Range of percentages of similarity : 91,5 – 99,6 %

61 species studied

minimum : C. antarcticum AY553293 – C. taeanense AY883416

maximum : C. solincola EU516352 – C. treverense FN297836

Citrobacter

Range of percentages of similarity : 96,5 – 99,7 %

10 species studied

minimum : C. gillenii AF025367 – C. rodentium AF025363

maximum : C. braakii AF025368 - C. gillenii AF025367

Clostridium

Range of percentages of similarity : 78,4 – 99,9 %

162 species studied

minimum : C. caminithermale AF458779 – C. rectum X77850

maximum : C. scatologenes AB610553 – C. carboxidivorans FR733710

Collinsella

Range of percentages of similarity : 92,2 – 97,7 %

4 species studied

minimum : C. intestinalis AB031063 – C. aerofaciens AB011816

maximum : C. intestinalis AB031063 – C. stercoris AB031061

Comamonas

Range of percentages of similarity : 92,8 – 99,9 %

14 species studied

minimum : C. koreensis AF275377 – C. badia AB164432

maximum : C. testosteroni M11224 – C. thiooxydans DQ322069

Cytophaga

Range of percentages of similarity : 81,3 -98,6 %

4 species studied

minimum : C. aurantiaca AB681044 – C. fermentans AB517712

maximum : C. aurantiaca AB681044 – C. hutchinsonii AB517710


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